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Table 9 Amino acid classification

From: Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding

Amino acid classification

Aliphatic amino acid:

C1 = {A,V,L,I,M,C}

Aromatic amino acid:

C2 = {FW,Y}

Polar amino acid:

C3 = {S,TN,Q}

Positive amino acid:

C4 = {K,R}

Negative amino acid:

C5 = {D,E}

Special conformations:

C6 = {G,P}

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BMC Bioinformatics

ISSN: 1471-2105

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