Fig. 3
From: Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains
Narrow Peaks in two GABP ChIP-seq Datasets. a A UCSC Genome Browser screenshot of the Jurkat ChIP-seq and peaks called by the various methods. b The number of peaks called for each method and the average peak width. c The number of peaks called, sensitivity and the percentage of peaks that overlapped predicted binding sites for the original ChIP-seq dataset and down-sampled versions of it. The colors used in the graphs represent the same programs listed in the legend for (b). d A UCSC Genome Browser screenshot of the ENCODE ChIP-seq and peaks called by the various methods. e The number of qPCR validated sites and predicted binding sites overlapped by the peaks and the percentage of peaks that overlapped predicted binding sites called by the various methods