Skip to main content
Fig. 4 | BMC Bioinformatics

Fig. 4

From: pcaReduce: hierarchical clustering of single cell transcriptional profiles

Fig. 4

Performance comparison on cell line data. Classification performance against known a tissue-level and b cell-line level labels. All points and boxplots illustrate performance relative to the benchmark (Method 11) measured as ARANDI score. Numbers 1−11 correspond to clustering methods in table below. Blue and green circles for Methods 1-2 illustrate consensus clustering of 100 runs of pcaReduce algorithm with sampling and max merging settings respectively. Each point for Method 10 (SC3) corresponds to a different range of the parameter d. Further details can be found in Additional file 1: Figure S3

Back to article page