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Table 5 Number of statistically significant pathways as identified by a Fisher’s exact test that are enriched in the predicted modules in the PPI networks

From: Comparison of module detection algorithms in protein networks and investigation of the biological meaning of predicted modules

Tax id

\(D_{M_{pearson}}\phantom {\dot {i}\!}\)

\(D_{M_{spearman}}\phantom {\dot {i}\!}\)

\(D_{{sp}_{pearson}}\phantom {\dot {i}\!}\)

\(D_{sp_{spearman}}\phantom {\dot {i}\!}\)

Fast greedy

Label propogation

Multilevel

Spinglass

Walktrap

Total pathways

House Mouse

608

617

476

477

949

818

817

801

903

7057

Norway rat

182

35

159

164

265

97

315

311

147

5012

Schizosaccharomyces

33

48

11

8

25

2

66

78

98

1115

pombe 972h

          

Plasmodium falciparum 3D7

0

0

0

0

0

0

0

0

0

51

Arabidopsis Thaliana

466

458

485

433

657

834

747

668

869

2506

Saccharomyces cerevisiae

780

772

265

199

944

10

1019

993

883

3236

S288c

          

Caenorhabditis elegans

60

114

104

105

203

101

145

203

249

1823

Drosophila melanogaster

757

778

618

640

700

206

812

837

863

3984

Homo sapiens

1277

762

467

536

1321

8

1863

2011

1824

9371

  1. The bold values show the respective number modules predicted by them