Table 3 Average read length after trimming and error correction for the different platforms and library preparation methods (Nextera, NexteraXT (NXT), Parkinson, Standard)
From: Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data
Platform | GAII | HiSeq | MiSeq | ||||||
|---|---|---|---|---|---|---|---|---|---|
Library | Nextera | Parkinson | Standard | Nextera | NXT | Stand. | Nextera | NXT | Standard |
Original | 100 | 101 | 101 | 100/101 | 100/101 | 100 | 250 | 250 | 250 |
Quality trimming | 89 | 92 | 92 | 97 | 96 | 94 | 209 | 205 | 175 |
BayesHammer | 92 | 94 | 95 | 98 | 98 | 96 | 219 | 216 | 187 |
Both | 90 | 93 | 94 | 97 | 96 | 94 | 210 | 206 | 176 |