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Table 1 Feature-level statistics for the microarray probesets associated with the top-ranked GO term

From: GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

Probeset

Score

Rank

Gene name

Description

Bt.552.1.S1_at

0.356

1

CCL5

Bos taurus chemokine (C-C motif) ligand 5 (CCL5), mRNA. [Source:RefSeq mRNA;Acc:NM_175827]

Bt.28088.1.S1_at

0.121

33

CXCL13

Bos taurus chemokine (C-X-C motif) ligand 13 (CXCL13), mRNA. [Source:RefSeq mRNA;Acc:NM_001015576]

Bt.22009.1.S1_at

0.114

38

CXCL16

Bos taurus chemokine (C-X-C motif) ligand 16 (CXCL16), mRNA. [Source:RefSeq mRNA;Acc:NM_001046095]

Bt.9560.1.S1_at

0.097

57

CCL20

Bos taurus chemokine (C-C motif) ligand 20 (CCL20), mRNA. [Source:RefSeq mRNA;Acc:NM_174263]

Bt.23093.1.S1_at

0.049

130

CXCL3

Bos taurus chemokine (C-X-C motif) ligand 3 (CXCL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046513]

Bt.611.1.S1_at

0.037

166

GRO1

Bos taurus chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (GRO1), mRNA. [Source:RefSeq mRNA;Acc:NM_175700]

Bt.611.1.S1_x_at

0.033

192

GRO1

Bos taurus chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (GRO1), mRNA. [Source:RefSeq mRNA;Acc:NM_175700]

Bt.9504.1.A1_at

0.028

244

CCL4

Bos taurus chemokine (C-C motif) ligand 4 (CCL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075147]

Bt.611.1.S2_at

0.025

277

GRO1

Bos taurus chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (GRO1), mRNA. [Source:RefSeq mRNA;Acc:NM_175700]

Bt.22009.2.S1_a_at

0.023

298

CXCL16

Bos taurus chemokine (C-X-C motif) ligand 16 (CXCL16), mRNA. [Source:RefSeq mRNA;Acc:NM_001046095]

Bt.21088.1.S1_at

0.023

301

CCL22

Bos taurus chemokine (C-C motif) ligand 22 (CCL22), mRNA. [Source:RefSeq mRNA;Acc:NM_001099162]

Bt.14087.1.A1_at

0.023

307

 

Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BGB8]

Bt.2408.1.S1_at

0.013

677

CCL2

Bos taurus chemokine (C-C motif) ligand 2 (CCL2), mRNA. [Source:RefSeq mRNA;Acc:NM_174006]

Bt.154.1.S1_at

0.011

844

CCL8

Bos taurus chemokine (C-C motif) ligand 8 (CCL8), mRNA. [Source:RefSeq mRNA;Acc:NM_174007]

Bt.8144.1.S1_at

0.006

1679

XCL1

Bos taurus chemokine (C motif) ligand 1 (XCL1), mRNA. [Source:RefSeq mRNA;Acc:NM_175716]

Bt.7165.1.S1_at

0.003

3007

CXCL6

Bos taurus chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2) (CXCL6), mRNA. [Source:RefSeq mRNA;Acc:NM_174300]

Bt.610.1.A1_at

0.002

4360

 

Bos taurus chemokine (C-X-C motif) ligand 2 (CXCL2), mRNA. [Source:RefSeq mRNA;Acc:NM_174299]

Bt.9974.1.S1_at

0.001

4805

CCL3

Bos taurus chemokine (C-C motif) ligand 3 (CCL3), mRNA. [Source:RefSeq mRNA;Acc:NM_174511]

Bt.9974.1.S1_a_at

0.000

5086

CCL3

Bos taurus chemokine (C-C motif) ligand 3 (CCL3), mRNA. [Source:RefSeq mRNA;Acc:NM_174511]

Bt.6556.1.S1_at

0.000

5086

 

Bos taurus regakine 1 (LOC504773), mRNA. [Source:RefSeq mRNA;Acc:NM_001034220]

Bt.21950.1.S1_at

0.000

5086

CCL16

chemokine (C-C motif) ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]

Bt.21950.1.S1_s_at

0.000

5086

CCL16

chemokine (C-C motif) ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]

Bt.20673.1.A1_at

0.000

5086

CCL1

chemokine (C-C motif) ligand 1 [Source:HGNC Symbol;Acc:HGNC:10609]

Bt.2408.1.S1_s_at

0.000

5086

CCL2

Bos taurus chemokine (C-C motif) ligand 2 (CCL2), mRNA. [Source:RefSeq mRNA;Acc:NM_174006]

Bt.155.1.S1_at

0.000

5086

CXCL8

Bos taurus interleukin 8 (IL8), mRNA. [Source:RefSeq mRNA;Acc:NM_173925]

Bt.11581.1.S1_at

0.000

5086

PF4

Bos taurus platelet factor 4 (PF4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101062]

Bt.16966.1.S1_at

0.000

5086

CXCL10

Bos taurus chemokine (C-X-C motif) ligand 10 (CXCL10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046551]

  1. The table_genes function was used to export results for the top-ranked GO term chemokine activity (GO:0008009)