From: Stepwise approach for combining many sources of evidence for site-recognition in genomic sequences
Chromosome | Objective | Method | Combination | auROC | auPRC | G | Sp | Sn | TP | FN | TN | FP | #models | Time(s) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chr. 1 | - | Std | - | 0.9280 | 0.0142 | 0.8487 | 0.8942 | 0.8055 | 1735 | 419 | 21,077,932 | 2,495,099 | - | - |
auROC | Cons | Sum | 0.9705 | 0.0368 | 0.8868 | 0.9707 | 0.8101 | 1745 | 409 | 22,882,052 | 690,979 | 4 | 4818 | |
auPRC | Cons | Sum | 0.9522 | 0.0525 | 0.8165 | 0.9762 | 0.6829 | 1471 | 683 | 23,011,801 | 561,230 | 22 | 9702 | |
G | Cons | Majority | 0.9307 | 0.0013 | 0.9207 | 0.9426 | 0.8993 | 1937 | 217 | 22,218,892 | 1,354,139 | 2 | 1223 | |
Chr. 3 | - | Std | - | 0.9233 | 0.0083 | 0.8256 | 0.9159 | 0.7442 | 829 | 285 | 19,711,889 | 1,810,611 | - | - |
auROC | Cons | Sum | 0.9720 | 0.0262 | 0.8959 | 0.9676 | 0.8294 | 924 | 190 | 20,826,101 | 696,399 | 4 | 4,094 | |
auPRC | Cons | Sum | 0.9421 | 0.0297 | 0.7810 | 0.9735 | 0.6266 | 698 | 416 | 20,951,286 | 571,214 | 10 | 8019 | |
G | Cons | Majority | 0.9584 | 0.0015 | 0.9128 | 0.9462 | 0.8806 | 981 | 133 | 20,364,397 | 1,158,103 | 4 | 1719 | |
Chr. 13 | - | Std | - | 0.9185 | 0.0071 | 0.8150 | 0.9103 | 0.7297 | 243 | 90 | 9,902,079 | 976,223 | - | - |
auROC | Cons | Sum | 0.9585 | 0.0156 | 0.8817 | 0.9733 | 0.7988 | 266 | 67 | 10,587,495 | 290,807 | 5 | 4542 | |
auPRC | Cons | Sum | 0.9392 | 0.0311 | 0.7604 | 0.9824 | 0.5886 | 196 | 137 | 10,687,114 | 191,188 | 20 | 9136 | |
G | Cons | Majority | 0.9502 | 0.0106 | 0.8878 | 0.9545 | 0.8258 | 275 | 58 | 10,383,296 | 495,006 | 6 | 1619 | |
Chr. 19 | - | Std | - | 0.9328 | 0.0379 | 0.8515 | 0.8664 | 0.8368 | 1190 | 232 | 4,042,574 | 623,230 | - | - |
auROC | Cons | Sum | 0.9731 | 0.0843 | 0.9160 | 0.9335 | 0.8987 | 1278 | 144 | 4,355,655 | 310,149 | 5 | 3878 | |
auPRC | Cons | Sum | 0.9557 | 0.1119 | 0.8787 | 0.9250 | 0.8347 | 1187 | 235 | 4,316,077 | 349,727 | 15 | 8806 | |
G | Cons | Majority | 0.9346 | 0.0026 | 0.9169 | 0.9002 | 0.9339 | 1328 | 94 | 4,199,984 | 465,820 | 2 | 856 | |
Chr. 21 | - | Std | - | 0.8890 | 0.0083 | 0.7778 | 0.9191 | 0.6582 | 156 | 81 | 3,425,375 | 301,584 | - | |
auROC | Cons | Sum | 0.9674 | 0.0383 | 0.8797 | 0.9654 | 0.8017 | 190 | 47 | 3,597,983 | 128,976 | 4 | 2379 | |
auPRC | Cons | Sum | 0.9455 | 0.0382 | 0.7970 | 0.9713 | 0.6540 | 155 | 82 | 3,620,079 | 106,880 | 18 | 8134 | |
G | Cons | Majority | 0.9199 | 0.0007 | 0.9087 | 0.9320 | 0.8861 | 210 | 27 | 3,473,463 | 253,496 | 2 | 507 |