Table 2 Comparison of HPG Pore to the other tools available
From: HPG pore: an efficient and scalable framework for nanopore sequencing data
Feature | HPG Pore | poRe | Poretools |
|---|---|---|---|
Extract FASTq | Y | Y | Y |
Extract FASTA | Y | Y | Y |
Organise fast5 into run folders | – | Y | – |
Create tar files of runs | – | – | Y |
Organise the results into run folders | Y | – | – |
Plot yield | Y | Y | Y |
Plot squiggle | Y | Y | Y |
Extract run stats | Y | Y | Y |
Read length histogram | Y | Y | Y |
read length (max., avg., min) | Y | Y | Y |
Mean read quality | Y | – | – |
Nucleotides content: count and % | Y | – | Y1 |
%GC | Y | – | – |
Plot Frequency- %GC | Y | – | – |
Plot per base sequence content | Y | – | – |
Read quality histogram | Y | – | – |
Reads per channel histogram | Y | Y | Y2 |
Nucleotides per channel histogram | Y | Y | – |