From: HPG pore: an efficient and scalable framework for nanopore sequencing data
Output file name | File description |
---|---|
summary.txt | Text file containing the number of reads and nucleotides, the mean, min. and max read length, nucleotide distribution, %GC, and mean quality |
seq_ length_histogram.jpg | Image of the read length histogram |
seq_content_per_pos.jpg | Image of the nucleotides (A, C, T, G, N) per position in the read |
seq_ gc_histogram.jpg | Image of the GC histogram |
seq_yield.jpg | Image of the number of nucleotides (yield) over time |
seq_ quality_histogram.jpg | Image of the read quality histogram |
seq_quality_per_pos.jpg | Image of the mean quality per position in read |
seq_ reads_per_channel.jpg | Image of the number of reads processed per channel |
seq_ yield_per_channel.jpg | Image of the number of nucleotides (yield) processed per channel |