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Table 1 Files generated (for each run) by the stats command in HPG pore, where seq can be a template, a complement or a 2D read

From: HPG pore: an efficient and scalable framework for nanopore sequencing data

Output file name

File description

summary.txt

Text file containing the number of reads and nucleotides, the mean, min. and max read length, nucleotide distribution, %GC, and mean quality

seq_ length_histogram.jpg

Image of the read length histogram

seq_content_per_pos.jpg

Image of the nucleotides (A, C, T, G, N) per position in the read

seq_ gc_histogram.jpg

Image of the GC histogram

seq_yield.jpg

Image of the number of nucleotides (yield) over time

seq_ quality_histogram.jpg

Image of the read quality histogram

seq_quality_per_pos.jpg

Image of the mean quality per position in read

seq_ reads_per_channel.jpg

Image of the number of reads processed per channel

seq_ yield_per_channel.jpg

Image of the number of nucleotides (yield) processed per channel