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Table 2 This table summarizes how many of the structures identified as having a significant cluster by one of the quaternary methodologies also had a subunit that had at least one damaging (in the case of Polyphen-2) or driver (in the case of CHASM) mutation

From: Leveraging protein quaternary structure to identify oncogenic driver mutations

 

Polyphen-2

CHASM

Total flagged

Method

Benign

Possibly damaging

Probably damaging

FDR ≤ 0.2

by quaternary approach

(1)

(2)

(3)

(4)

(5)

(6)

iPAC

198

11

134

78

343

GraphPAC

198

11

120

89

329

SpacePAC

198

11

118

74

327

  1. Column (1) specifies the quaternary methodology used and column (6) denotes how many total structures were flagged using that quaternary approach. Columns (3)-(5) break out the results by the specific machine learning approach