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Table 1 Precision of estimated p-values from tests with 100 permutations, estimated from 1,000 repetitions

From: Testing for association between RNA-Seq and high-dimensional data

 

EXOSC9

FRMD1

SLC22A6

CNFN

PDHB

U2AF1L4

crude

3.50E+03

4.25E+02

4.13E+02

5.74E+03

1.75E+03

3.38E+03

MCV

2.78E+04

9.17E+04

1.29E+03

1.28E+13

1.89E+04

1.43E+04

 

ENTPD6

TMED2

POU6F1

ANP32E

CLDND1

C2orf54

crude

1.91E+03

1.61E+03

1.67E+03

1.38E+05

3.91E+03

5.57E+02

MCV

7.31E+03

8.47E+03

1.50E+04

7.24E+10

3.93E+04

1.12E+03

  1. At all randomly selected genes (columns) the crude permutation test (first row) is outperformed by the method of control variables (second row) in terms of precision