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Fig. 7 | BMC Bioinformatics

Fig. 7

From: Trimming of sequence reads alters RNA-Seq gene expression estimates

Fig. 7

Differential gene expression following trimming in two additional data sets. a Comparison of the gene expression estimates from an RNA-Seq data set derived from rat samples, between SolexaQA trimmed data sets and the untrimmed data set. Q# specifies the quality threshold imposed. L# specifies the minimum read length, in bases, required for inclusion after Q40 trimming. Red dots represent statistically significant differential expression between data sets. b Comparison of the gene expression estimates from an RNA-Seq data set derived from yeast samples. c The number of significantly biased genes at a range of quality scores and lengths, rat data sets. d The number of significantly biased genes at a range of quality scores and lengths, yeast data sets

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