Table 5 Frequencies of errors of different types in MSAs among 15 mammals
Error type | MAFFT (E-INS-1) | (Percent) | MAFFT (E-INS-i) | (Percent) | Prank (Best-fit) | (Percent) |
|---|---|---|---|---|---|---|
Shift | 118,707 | (38.59 %) | 130,029 | (38.31 %) | 199,756 | (55.21 %) |
Merge | 6344 | (2.06 %) | 7832 | (2.31%) | 7026 | (1.94 %) |
Purge | 6730 | (2.19 %) | 7954 | (2.34 %) | 5247 | (1.45 %) |
Split | 18 | (0.006 %) | 5 | (0.001 %) | 1830 | (0.51 %) |
Ex-nihilo | 1 | (0.000 %) | 0 | (0 %) | 138 | (0.04 %) |
v-Merge a | 1476 | (0.48 %) | 1391 | (0.41 %) | 2156 | (0.60 %) |
v-Split b | 190 | (0.06 %) | 56 | (0.02 %) | 598 | (0.17 %) |
CII c | 3131 | (1.02 %) | 4992 | (1.48 %) | 309 | (0.09 %) |
iCII d | 5315 | (1.73%) | 9150 | (2.70 %) | 141 | (0.04 %) |
Others e | 1311 | (0.43 %) | 1527 | (0.45 %) | 2225 | (0.62 %) |
Mixture f | 29,385 | (9.55 %) | 34,288 | (10.10 %) | 34,151 | (9.44 %) |
(Paired) g | (11,813) | (3.84 %) | (13,193) | (3.89 %) | (14,718) | (4.07 %) |
Complex h | 135,026 | (43.89 %) | 142,219 | (41.90 %) | 108,237 | (29.92 %) |
Total | 307,634 | (100 %) | 339,446 | (100 %) | 361,814 | (100 %) |