Dataset | ||||
---|---|---|---|---|
Subjects counted | Aligner a | 12 primates | 15 mammls | 9 fast-evolving mammals |
[True MSAs] | ||||
1. MSAs | — | 10,000 | 10,000 | 3000 |
2. Gapped segments | — | 404,394 | 966,017 | 309,425 |
3. Gapped segments with long indels b (%) c | — | 446 (0.1%) | 9503 (1.0%) | 5784 (1.9%) |
[Reconstructed MSAs] | ||||
4. All erroneous segments | MAFFT-1 a | 145,002 | 320,455 | 29,781 |
MAFFT-i a | 139,701 | 352,482 | 58,372 | |
Prank | 135,602 | 374,087 | 39,315 | |
5. True gapped segments in item 4 (%) c | MAFFT-1 | 182,712 (45.2%) | 836,766 (86.6%) | 305,756 (98.8%) |
MAFFT-i | 173,701 (43.0%) | 813,591 (84.2%) | 300,879 (97.2%) | |
Prank | 150,618 (37.2%) | 722,767 (74.8%) | 300,359 (97.1%) | |
6. Erroneous segments without long indels d | MAFFT-1 | 144,422 | 308,923 | 24,239 |
MAFFT-i | 139,144 | 340,865 | 51,912 | |
Prank | 135,097 | 363,961 | 34,907 | |
7. True gapped segments in item 6 (%) c | MAFFT-1 | 181,868 (45.0%) | 781,784 (80.9%) | 171,008 (55.3%) |
MAFFT-i | 172,915 (42.8%) | 772,818 (80.0%) | 234,311 (75.7%) | |
Prank | 150,010 (37.1%) | 676,950 (70.1%) | 175,967 (56.9%) |