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Table 5 Comparison of retrieval (decompression) times of six software suites. Times are recorded row by row denoting real, user, and system time in order

From: MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression

Data

Time

MCH

MCG

MCEG

bzip2

gzip

MFComp

ERR321482

real

23 m 17 s

25 m 18 s

24 m 56 s

0 m 57 s

0 m 17 s

2 m 26 s

 

user

16 m 17 s

16 m 30 s

17 m 7 s

0 m 45 s

0 m 9 s

4 m 42 s

 

sys

9 m 2 s

10 m 42 s

10 m 25 s

0 m 2 s

0 m 1 s

0 m 4 s

SRR359032

real

12 m 16 s

11 m 43 s

13 m 17 s

2 m 37 s

1 m 28 s

7 m 58 s

 

user

11 m 59 s

11 m 24 s

12 m 43 s

2 m 8 s

0 m 28 s

15 m 10 s

 

sys

2 m 24 s

1 m 42 s

3 m 12 s

0 m 4 s

0 m 2 s

0 m 19 s

ERR532393

real

48 m 19 s

47 m 5 s

55 m 58 s

5 m 25 s

2 m 30 s

15 m 29 s

 

user

39 m 59 s

40 m 5 s

43 m 21 s

4 m 23 s

0 m 55 s

29 m 23 s

 

sys

15 m 39 s

13 m 25 s

29 m 17 s

0 m 7 s

0 m 5 s

0 m 17 s

SRR1450398

real

28 m 43 s

27 m 54 s

29 m 27 s

3 m 25 s

1 m 54 s

10 m 8 s

 

user

29 m 55 s

29 m 47 s

30 m 45 s

2 m 52 s

0 m 37 s

19 m 1 s

 

sys

7 m 10 s

5 m 52 s

7 m 4 s

0 m 5 s

0 m 3 s

0 m 26 s

SRR062462

real

23 m 9 s

22 m 55 s

26 m 6 s

1 m 3 s

1 m 19 s

5 m 52

 

user

21 m 10 s

21 m 10 s

21 m 58 s

0 m 42 s

0 m 22 s

10 m 31 s

 

sys

4 m 49 s

4 m 53 s

10 m 12 s

0 m 4 s

0 m 3 s

0 m 26 s