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Table 3 Comparison of processing (compression) times of six software suites. Times are recorded row by row denoting real, user, and system time in order

From: MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression

Data

Time

MCH

MCG

MCEG

bzip2

gzip

MFComp

ERR321482

real

299 m 20 s

294 m 27 s

274 m 43 s

2 m 2 s

3 m 49 s

2 m 38 s

 

user

422 m 21 s

422 m 49 s

402 m 25 s

1 m 56 s

3 m 45 s

4 m 49 s

 

sys

12 m 24 s

8 m 48 s

12 m 13 s

0 m 1 s

0 m 1 s

0 m 13 s

SRR359032

real

127 m 34 s

129 m 32 s

128 m 14 s

5 m 36 s

10 m 39 s

8 m 2 s

 

user

245 m 53 s

247 m 43 s

253 m 16 s

5 m 19 s

10 m 30 s

13 m 3 s

 

sys

8 m 37 s

10 m 1 s

15 m 25 s

0 m 2 s

0 m 2 s

0 m 15 s

ERR532393

real

639 m 55 s

635 m 53 s

641 m 32 s

11 m 28 s

22 m 18 s

17 m 2 s

 

user

1061 m 50 s

1069 m 9 s

1090 m 20 s

11 m 4 s

21 m 58 s

28 m 29 s

 

sys

73 m 59 s

27 m 59 s

43 m 35 s

0 m 5 s

0 m 5 s

0 m 21 s

SRR1450398

real

440 m 4 s

439 m 42 s

440 m 36 s

7 m 38 s

14 m 39 s

10 m 32 s

 

user

66 m 56 s

865 m 38 s

865 m 6 s

7 m 19 s

14 m 24 s

18 m 8 s

 

sys

821 m 2 s

23 m 51 s

26 m 5 s

0 m 3 s

0 m 3 s

0 m 18 s

SRR062462

real

217 m 21 s

224 m 32 s

215 m 58 s

2 m 48 s

2 m 6 s

6 m 38 s

 

user

254 m 26 s

261 m 19 s

256 m 17 s

2 m 7 s

1 m 18 s

10 m 39 s

 

sys

15 m 45 s

16 m 48 s

20 m 14 s

0 m 3 s

0 m 3 s

0 m 16 s