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Fig. 4 | BMC Bioinformatics

Fig. 4

From: Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2

Fig. 4

RAM requirements of ERNE 1, ERNE 2 (aligner: ERNE-BS5, caller: ERNE-METH), Bismark with Bowtie 1 (bt1), Bismark with Bowtie 2 (bt2) (aligner: bismark, caller: bismark_methylation_extractor), and BSMAP (aligner: bsmap, caller: methratio.py). This data has been collected from the real WGBS Human dataset experiment discussed in the next section, except for the memory usage of BSMAP’s methylation caller (for which we used the declared value of 26 GB on Human genome). The horizontal green line marks the space of the raw reference fasta file (3.2 GB)

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