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Table 4 Absolute difference between median of FISH measurements and median of estimates for each pair of loci and each method

From: Impact of data resolution on three-dimensional structure inference methods

 

Absolute median difference

 

Method

L12

L13

L23

L24

L34 a

L56

L57

L67

68

Average b

tREX

0.083

0.113

0.019

0.176

0

0.017

0.070

0.102

0.155

0.082

tPAM

0.196

0.211

0.152

0.218

0

0.125

0.149

0.084

0.155

0.143

BACH

0.031

0.200

0.175

0.026

0

0.099

0.081

0.118

0.132

0.096

ShRec3D

0.036

0.018

0.354

0.448

0

0.607

0.421

0.456

0.426

0.307

ChromSDE

0.033

0.200

0.191

0.150

0

0.262

0.240

0.295

0.284

0.184

PASTIS

0.063

0.015

0.429

0.136

0

0.129

0.132

0.182

0.203

0.143

  1. aBy design, we standardized all distances so that the median distance between loci L 3 and L 4 is 1 for all the methods (including FISH). Thus, the difference between each method and FISH is zero
  2. bAverage is averaging over all pairs