Table 2 Comparison of InteMAP merging algorithm with MeGAMerge and Minimus2
From: InteMAP: Integrated metagenomic assembly pipeline for NGS short reads
| Â | Total cover length (Mbp) | Corr. N-len at 10 Mbp (bp) | E-size (bp) | Num. of covered genes | Total errors | Kbp/errors | Identity (%) |
|---|---|---|---|---|---|---|---|
Merging high-coverage-sequence assemblies (from IDBA-UD and ABySS) | |||||||
InteMAP | 202.3 | 145,649 | 9,960 | 12,491 | 50 | 405.6 | 99.9 |
MeGAMerge | 205.9 | 154,674 | 10,290 | 12,649 | 94 | 219.1 | 99.9 |
Minimus2 | 11.9 | 40,393 | 6,630 | 7,237 | 63 | 188.7 | 99.9 |
Merging low-coverage-sequence assemblies (from IDBA-UD and CABOG) | |||||||
InteMAP | 262.7 | 118,056 | 10,317 | 65,809 | 5,059 | 51.8 | 99.8 |
MeGAMerge | 269.3 | 145,022 | 11,534 | 69,324 | 5,287 | 50.9 | 99.7 |
Minimus2 | 108.4 | 39,454 | 7,233 | 30,918 | 3,029 | 35.7 | 99.8 |
Final merged assembly | |||||||
InteMAP | 266.8 | 244,190 | 17,652 | 70,859 | 5,072 | 52.6 | 99.8 |
MeGAMerge | 273.8 | 253,783 | 18,148 | 72,014 | 5,399 | 50.5 | 99.8 |
Minimus2 | 111.3 | 55,893 | 10,285 | 34,892 | 3,045 | 36.4 | 98.8 |