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Fig. 3 | BMC Bioinformatics

Fig. 3

From: SpirPro: A Spirulina proteome database and web-based tools for the analysis of protein-protein interactions at the metabolic level in Spirulina (Arthrospira) platensis C1

Fig. 3

Example of using Snapshot-Interaction tool to visualize (i) the PPI network around RbcS protein [SPLC1_S240080] of S. platensis C1, which is orthologous to the slr0012 protein of Synechocystis sp. PCC 6803, and (ii) differentially expressed proteins after temperature down-shift in cytosol fraction. Note: A node marked by an octagon represents differential expression. In the node label, line 1 describes protein expression conditions and fractions (with colored marks); line 2 shows the corresponding Synechocystis ORF and gene name (blue text); and line 3 shows protein ortholog in Spirulina. The mark denotes expressed conditions: temperature up-shift (sun) and down-shift (umbrella/snow-man). The colors of the marks, blue, green and orange, represent the cytosol fraction, thylakoid membrane fraction, and plasma membrane fraction, respectively

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BMC Bioinformatics

ISSN: 1471-2105

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