Table 2 Pfam-A Seed Alignment Sources used in ICP-MACP Comparison
From: Subfamily specific conservation profiles for proteins based on n-gram patterns
S30 (N = 207) | S100 (N = 441) | S500 (N = 1,666) | S1000 (N = 1,931) | ||||
|---|---|---|---|---|---|---|---|
PF02160 | PF07292 | PF00778 | PF03351 | PF00215 | PF01544 | PF00038 | PF00974 |
PF02262 | PF07298 | PF00812 | PF03428 | PF00251 | PF01555 | PF00079 | PF01032 |
PF02288 | PF07386 | PF01190 | PF03619 | PF00317 | PF01561 | PF00239 | PF01138 |
PF02509 | PF07413 | PF01199 | PF03663 | PF00328 | PF01638 | PF00285 | PF01423 |
PF02783 | PF07454 | PF01491 | PF03709 | PF00410 | PF01794 | PF00348 | PF01425 |
PF03068 | PF07515 | PF01500 | PF03914 | PF00464 | PF02491 | PF00437 | PF01699 |
PF03173 | PF07574 | PF01874 | PF03942 | PF00466 | PF02910 | PF00462 | PF02080 |
PF03206 | PF07775 | PF01946 | PF04221 | PF00636 | PF03062 | PF00481 | PF02811 |
PF03215 | PF07781 | PF02005 | PF04329 | PF00650 | PF03358 | PF00482 | PF02932 |
PF03409 | PF07842 | PF02076 | PF05047 | PF00781 | PF03507 | PF00498 | PF03764 |
PF03612 | PF07959 | PF02589 | PF05127 | PF00846 | PF04069 | PF00682 | PF03797 |
PF03676 | PF08001 | PF02709 | PF06761 | PF01056 | PF04607 | PF00690 | PF04539 |
PF03762 | PF08004 | PF02758 | PF07470 | PF01065 | PF05368 | PF00844 | PF07728 |
PF03829 | PF08315 | PF03140 | PF07486 | PF01409 | PF07478 | PF00899 | PF07885 |
PF03964 | PF08470 | PF03350 | PF08379 | PF01421 | PF08541 | PF00948 | PF08544 |