Table 2 HLA Class II haplotype (2 loci) frequencies above 0.01 determined by direct counting and computational methods (n = 61 individuals)
From: Evaluation of two methods for computational HLA haplotypes inference using a real dataset
Correct Haplotypes | Haplotype Frequency | |||
|---|---|---|---|---|
Real | Arlequin V3.0 | PHASE v2.1.1 | ||
1 | DQB1*03-DRB1*04 | 0.164 | 0.164 | 0.163 |
2 | DQB1*02-DRB1*07 | 0.148 | 0.148 | 0.146 |
3 | DQB1*05-DRB1*01 | 0.139 | 0.139 | 0.139 |
4 | DQB1*03-DRB1*11 | 0.123 | 0.123 | 0.122 |
5 | DQB1*06-DRB1*15 | 0.074 | 0.074 | 0.074 |
6 | DQB1*06-DRB1*13 | 0.074 | 0.073 | 0.072 |
7 | DQB1*02-DRB1*03 | 0.074 | 0.074 | 0.073 |
8 | DQB1*04-DRB1*08 | 0.041 | 0.041 | 0.041 |
9 | DQB1*05-DRB1*15 | 0.025 | 0.025 | 0.025 |
10 | DQB1*03-DRB1*13 | 0.025 | 0.033 | 0.031 |
11 | DQB1*05-DRB1*10 | 0.025 | 0.025 | 0.024 |
12 | DQB1*05-DRB1*14 | 0.016 | 0.016 | 0.014 |
13 | DQB1*02-DRB1*13 | 0.016 | 0.008 | 0.010 |
14 | DQB1*03-DRB1*12 | 0.016 | 0.016 | 0.016 |
15 | DQB1*03-DRB1*09 | 0.016 | 0.016 | 0.016 |
I F | 0.992 | 0.989 | ||
I H | 1.000 | 1.000 | ||
MSE | 7.3E-06 | 5.2E-06 |