Table 4 Mean and median percent error for all methods on the benchmark without query RNA flanks (3,429 datasets).
Mean and median error | Probalign | SSEARCH | BLAST | ClustalW | HMMER |
|---|---|---|---|---|---|
Complete benchmark | 30.8 | 30.4 | 31.4 | 22.1 | 32.0 | 20.9 | 37.9 | 38.5 | 44.9 | 44.7 |
Datasets with pairwise sequence identity at most 30% (14) | 62.4 | 59.5 | 70.8 | 94.5 | 78.4 | 100.0 | 74.5 | 97.5 | 96.7 | 100.0 |