Table 6 Window score based on residue surface areas
From: Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Sequence | E57 | F58 | E59 | I60 | Y61 | Y62 | I63 | L64 | L65 | G66 | E67 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
t = 0 | Win. score | -2.61 | -2.38 | -2.15 | -2.48 | -2.36 | -2.84 | -2.74 | -2.53 | -2.45 | -2.57 | -2.50 | |
Ind. score | -1.88 | -3.06 | -3.23 | -1.36 | -2.81 | -4.72 | -0.97 | -2.34 | -4.19 | -0.69 | -5.99 | ||
t = 280 | Win. score | -1.23 | -1.18 | -1.18 | -1.26 | -1.21 | -1.28 | -1.25 | -1.21 | -1.37 | -1.44 | -1.33 | |
Ind. score | -0.95 | -1.61 | -0.67 | -1.03 | -1.38 | -0.09 | -0.93 | -2.76 | -2.52 | -0.69 | -1.37 | ||
Query | Win. score | -1.47 | -1.34 | -1.36 | -1.48 | -1.48 | -1.50 | -1.46 | -1.50 | -1.00 | -0.99 | -1.20 | |
Ind. score | -1.09 | -1.10 | -5.99 | -0.82 | -0.18 | -1.18 | -0.58 | -1.07 | -2.92 | -0.69 | -0.87 |