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Table 1 Summary of the characteristics of the 6 models built for each query structure

From: Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?

Model

Characteristics

 

Template

Alignment

% seq. Id.

NS0

Native struct.

Exact

100

ST1

Similar

Good

20 – 30

ST2

Similar

Fair

0 – 20

ST3

Similar

Poor

0 – 15

DT1

Different

-

0 – 15

DT2

Different

-

0 – 15

  1. As a mnemonic, the first letter indicates whether the query sequence has been aligned with the right template (S) or not (D) and the last digit indicates the proximity of the model with the true structure. (See method section for further detail).
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BMC Bioinformatics

ISSN: 1471-2105

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