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Figure 8 | BMC Bioinformatics

Figure 8

From: Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?

Figure 8

Schematic representation of the all-β DT1a model. The top panel (A) corresponds to the initial conformation at t = 0 after minimisation in vacuum. The bottom panel (B) corresponds to the conformation at t = 280 ps (also minimised in vacuum). The backbone trace is shown as a blue ribbon, most residues as thin lines. Some residues of interest (see Table 6) are drawn with a "liquorice" representation. Oxygen atoms are coloured red, nitrogen atoms dark blue, carbon atoms cyan. This figure was created with VMD [37].

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