A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data

Table 6 The number of known biological interactions mined from BioGRID database [25] for each output cluster with cutoff = 0.5.

ci	n1	n2	n3	*size*	ci	n 1	n 2	n 3	size	ci	n1	n2	n3	*size*	ci	n 1	n 2	n 3	size
1	483	244	30	429	11	133	88	1	170	27	48	39	4	98	46	11	14	6	57
2	464	165	242	277	13	73	61	14	159	29	56	44	5	92	50	16	13	2	51
4	187	113	30	245	14	257	78	13	150	32	33	31	7	81	54	10	11	1	33
6	146	110	15	212	15	69	57	36	148	39	22	21	2	68
7	185	107	12	204	16	72	55	86	147	43	8	11	4	63
8	63	54	19	184	24	80	59	1	116	45	8	11	5	58

ci corresponds to the cluster index, n 1 the number of known biological interactions, n 2 the number of genes within each cluster having interactions with other genes, n 3 the number of known cell-cycle regulated genes according to the Spellman et al. [6], and size the number of genes within each cluster.

ISSN: 1471-2105