Prediction of glycosylation sites using random forests

BMC Bioinformatics

Table 2 Frequencies of selected amino acids surrounding modified Ser residues

position	-7	-6	-5	-4	-3	-2	-1	1	2	3	4	5	6	7
A	22	36	24	36	29	30	37	31	34	21	26	30	25	19
D	6	12	6	18	14	10	6	4	3	10	11	8	5	5
E	15	19	22	19	23	24	8	16	10	13	10	11	9	6
G	19	26	30	17	20	22	27	40	27	27	16	23	19	41
P	31	38	35	35	41	34	46	28	40	51	42	34	32	35
S	56	42	43	54	53	56	47	48	60	43	56	41	48	49
T	58	43	46	41	48	34	62	61	48	50	58	51	51	47

Frequency is reported as the number of occurrences in the set of 388 instances of modified Ser residues. Statistically significant increases over the expected frequencies are represented in bold; significant decreases are represented by italics. The full table containing all amino acids is included in additional file 2.

ISSN: 1471-2105

position	-7	-6	-5	-4	-3	-2	-1	1	2	3	4	5	6	7
A	22	36	24	36	29	30	37	31	34	21	26	30	25	19
D	6	12	6	18	14	10	6	4	3	10	11	8	5	5
E	15	19	22	19	23	24	8	16	10	13	10	11	9	6
G	19	26	30	17	20	22	27	40	27	27	16	23	19	41
P	31	38	35	35	41	34	46	28	40	51	42	34	32	35
S	56	42	43	54	53	56	47	48	60	43	56	41	48	49
T	58	43	46	41	48	34	62	61	48	50	58	51	51	47

position	-7	-6	-5	-4	-3	-2	-1	1	2	3	4	5	6	7
A	22	36	24	36	29	30	37	31	34	21	26	30	25	19
D	6	12	6	18	14	10	6	4	3	10	11	8	5	5
E	15	19	22	19	23	24	8	16	10	13	10	11	9	6
G	19	26	30	17	20	22	27	40	27	27	16	23	19	41
P	31	38	35	35	41	34	46	28	40	51	42	34	32	35
S	56	42	43	54	53	56	47	48	60	43	56	41	48	49
T	58	43	46	41	48	34	62	61	48	50	58	51	51	47

position	-7	-6	-5	-4	-3	-2	-1	1	2	3	4	5	6	7
A	22	36	24	36	29	30	37	31	34	21	26	30	25	19
D	6	12	6	18	14	10	6	4	3	10	11	8	5	5
E	15	19	22	19	23	24	8	16	10	13	10	11	9	6
G	19	26	30	17	20	22	27	40	27	27	16	23	19	41
P	31	38	35	35	41	34	46	28	40	51	42	34	32	35
S	56	42	43	54	53	56	47	48	60	43	56	41	48	49
T	58	43	46	41	48	34	62	61	48	50	58	51	51	47