MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

BMC Bioinformatics

Table 1 MAUVE parameter setup using the collinear genomes of E. coli MG1655 and Sakai strains.

a
	MGA	MAUVE
Min_rec_gap_length		200 (default)	1000	5000	10000
Number of backbone segments with a length ≤30 bp	37	588	242	93	45
Total number of backbone segments	617	1363	959	782	717
b
	MGA	MAUVE
Weight		57 (default)	500	1000	2000	3000	5000	10000
Number of LCB	1	113	47	25	10	4	4	1

Table 1a – Effect of the minimal_recursive_gap_length (Min_rec_gap_length) on backbone fragmentation (seed = 19 and weight=default). Table 1b – Effect of weight on the number of LCBs (min_rec_gap_len = 5000 and seed = 19).

ISSN: 1471-2105