From: Clustering cancer gene expression data: a comparative study
Dataset | Chip | Tissue | n | #C | Dist. Classes | m | d |
---|---|---|---|---|---|---|---|
Armstrong-V1 [52] | Affy | Blood | 72 | 2 | 24,48 | 12582 | 1081 |
Armstrong-V2 [52] | Affy | Blood | 72 | 3 | 24,20,28 | 12582 | 2194 |
Bhattacharjee [9] | Affy | Lung | 203 | 5 | 139,17,6,21,20 | 12600 | 1543 |
Chowdary [13] | Affy | Breast, Colon | 104 | 2 | 62,42 | 22283 | 182 |
Dyrskjot [14] | Affy | Bladder | 40 | 3 | 9,20,11 | 7129 | 1203 |
Golub-V1 [3] | Affy | Bone marrow | 72 | 2 | 47,25 | 7129 | 1877 |
Golub-V2 [3] | Affy | Bone marrow | 72 | 3 | 38,9,25 | 7129 | 1877 |
Gordon [53] | Affy | Lung | 181 | 2 | 31,150 | 12533 | 1626 |
Laiho [15] | Affy | Colon | 37 | 2 | 8,29 | 22883 | 2202 |
Nutt-V1 [54] | Affy | Brain | 50 | 4 | 14,7,14,15 | 12625 | 1377 |
Nutt-V2 [54] | Affy | Brain | 28 | 2 | 14,14 | 12625 | 1070 |
Nutt-V3 [54] | Affy | Brain | 22 | 2 | 7,15 | 12625 | 1152 |
Pomeroy-V1 [55] | Affy | Brain | 34 | 2 | 25,9 | 7129 | 857 |
Pomeroy-V2 [55] | Affy | Brain | 42 | 5 | 10,10,10,4,8 | 7129 | 1379 |
Ramaswamy [50] | Affy | Multi-tissue | 190 | 14 | 11,10,11,11,22,10,11,10,30,11,11,11,11,20 | 16063 | 1363 |
Shipp [56] | Affy | Blood | 77 | 2 | 58,19 | 7129 | 798 |
Singh [19] | Affy | Prostate | 102 | 2 | 58,19 | 12600 | 339 |
Su [57] | Affy | Multi-tissue | 174 | 10 | 26,8,26,23,12,11,7,27,6,28 | 12533 | 1571 |
West [58] | Affy | Breast | 49 | 2 | 25,24 | 7129 | 1198 |
Yeoh-V1 [20] | Affy | Bone marrow | 248 | 2 | 43,205 | 12625 | 2526 |
Yeoh-V2 [20] | Affy | Bone marrow | 248 | 6 | 15,27,64,20,79,43 | 12625 | 2526 |
Alizadeh-V1 [4] | cDNA | Blood | 42 | 2 | 21,21 | 4022 | 1095 |
Alizadeh-V2 [4] | cDNA | Blood | 62 | 3 | 42,9,11 | 4022 | 2093 |
Alizadeh-V3 [4] | cDNA | Blood | 62 | 4 | 21,21,9,11 | 4022 | 2093 |
Bittner [10] | cDNA | Skin | 38 | 2 | 19, 19 | 8067 | 2201 |
Bredel [11] | cDNA | Brain | 50 | 3 | 31,14,5 | 41472 | 1739 |
Chen [12] | cDNA | Liver | 180 | 2 | 104,76 | 22699 | 85 |
Garber [59] | cDNA | Lung | 66 | 4 | 17,40,4,5 | 24192 | 4553 |
Khan [60] | cDNA | Multi-tissue | 83 | 4 | 29,11,18,25 | 6567 | 1069 |
Lapointe-V1 [16] | cDNA | Prostate | 69 | 3 | 11,39,19 | 42640 | 1625 |
Lapoint-V2 [16] | cDNA | Prostate | 110 | 4 | 11,39,19,41 | 42640 | 2496 |
Liang [17] | cDNA | Brain | 37 | 3 | 28,6,3 | 24192 | 1411 |
Risinger [18] | cDNA | Endometrium | 42 | 4 | 13,3,19,7 | 8872 | 1771 |
Tomlins-V1 [61] | cDNA | Prostate | 104 | 5 | 27,20,32,13,12 | 20000 | 2315 |
Tomlins-V2 [61] | cDNA | Prostate | 92 | 4 | 27,20,32,13 | 20000 | 1288 |