Table 2 Comparison of GO enrichments for different memISA parameters in Dobrin (overlaps not removed)
From: A comparison of four clustering methods for brain expression microarray data
% enriched at varying p-vals | f = 0.5, n = 10 | f = 0.75, n = 5 | f = 0.75, n = 5, 10% of genes with lowest gene scores removed from clusters | f = 0.5, n = 3 |
|---|---|---|---|---|
p-val < 0.3 | 62.5 | 92.3 | 88.5 | 85.7 |
p-val < 0.1 | 50.0 | 65.4 | 57.7 | 60.7 |
p-val < 0.05 | 50.0 | 57.7 | 53.8 | 50.0 |
p-val < 0.01 | 43.8 | 42.3 | 42.3 | 46.4 |
p-val < 0.001 | 37.5 | 38.5 | 38.5 | 42.9 |
p-val < 0.0001 | 31.3 | 34.6 | 26.9 | 28.6 |
Gene coverage | 61.1 | 78.8 | 74.7 | 74.7 |
Number of clusters found | 16 | 26 | 26 | 28 |