Table 1 Results on the CMfinder-SARSE dataset
From: RNAalifold: improved consensus structure prediction for RNA alignments
RNA | #seq | MPI | RIBOSUM | RNAalifold | Pfold | KNetFold | McC_mea |
|---|---|---|---|---|---|---|---|
Antizyme_FSE | 13 | 87 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
ctRNA_pGA1 | 15 | 72 | 1.000 | 1.000 | 1.000 | 0.976 | 1.000 |
Entero_5_CRE | 160 | 84 | 1.000 | 0.848 | 0.478 | 1.000 | 0.942 |
Entero_CRE | 56 | 81 | 1.000 | 0.736 | 1.000 | 0.953 | 0.953 |
GcvB | 17 | 64 | 0.939 | 0.799 | 0.889 | 0.939 | 0.921 |
glmS | 11 | 60 | 0.986 | 0.972 | 0.972 | 0.809 | 0.837 |
HACA_sno_Snake | 22 | 90 | 0.871 | 0.407 | 0.414 | 0.915 | 0.884 |
HCV_SLIV | 110 | 89 | 1.000 | 0.922 | 1.000 | 1.000 | 0.961 |
HDV_ribozyme | 15 | 95 | 0.953 | -0.015 | 0.590 | 0.460 | 0.460 |
HepC_CRE | 52 | 87 | 1.000 | 0.962 | 1.000 | 1.000 | 1.000 |
Histone3 | 64 | 78 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
Hsp90_CRE | 4 | 98 | 0.855 | 0.855 | 0.413 | 0.867 | 0.874 |
IBV_D-RNA | 10 | 96 | 1.000 | 0.928 | 0.928 | 1.000 | 1.000 |
Intron_gpII | 114 | 54 | 1.000 | 0.779 | 1.000 | 1.000 | 1.000 |
IRE | 39 | 63 | 1.000 | 0.938 | 1.000 | 1.000 | 0.938 |
let-7 | 14 | 73 | 1.000 | 0.979 | 1.000 | 1.000 | 0.957 |
lin-4 | 9 | 73 | 1.000 | 0.973 | 1.000 | 1.000 | 1.000 |
Lysine | 43 | 49 | 0.990 | 0.918 | 0.960 | 0.990 | 0.990 |
mir-10 | 11 | 67 | 0.973 | 0.888 | 0.916 | 0.973 | 0.973 |
mir-194 | 4 | 79 | 0.870 | 0.849 | 1.000 | 0.866 | 0.698 |
mir-BART1 | 3 | 93 | 0.977 | 0.977 | 0.861 | 1.000 | 0.977 |
nos_TCE | 3 | 90 | 0.975 | 0.975 | 0.951 | 1.000 | 0.975 |
Purine | 22 | 56 | 0.945 | 0.917 | 1.000 | 0.945 | 0.945 |
Rhino_CRE | 12 | 72 | 0.734 | 0.734 | 0.680 | 0.974 | 0.756 |
RNA-OUT | 4 | 96 | 0.775 | 0.775 | 0.834 | 0.740 | 0.775 |
rncO | 6 | 80 | 0.903 | 0.923 | 0.668 | 0.896 | 0.825 |
Rota_CRE | 14 | 86 | 1.000 | 0.764 | 0.682 | 0.099 | -0.011 |
s2m | 38 | 79 | 0.739 | 1.000 | 0.774 | 0.652 | 0.861 |
SCARNA14 | 4 | 67 | 0.969 | 0.748 | -0.005 | 0.532 | 0.777 |
SCARNA15 | 3 | 96 | 1.000 | 1.000 | 0.601 | 0.971 | 0.925 |
SECIS | 63 | 43 | 0.941 | 0.813 | 0.943 | 0.971 | 0.813 |
SNORA14 | 3 | 92 | 0.944 | 0.944 | 0.853 | 0.959 | 0.869 |
SNORA18 | 6 | 79 | 0.913 | 0.503 | 0.702 | 0.971 | 0.893 |
SNORA38 | 5 | 84 | 0.759 | 0.743 | 0.858 | 0.410 | 0.734 |
SNORA40 | 7 | 80 | 0.962 | 0.962 | 0.704 | 0.948 | 0.920 |
SNORA56 | 4 | 97 | 0.816 | 0.922 | 0.446 | 0.779 | 0.741 |
SNORD105 | 2 | 89 | 1.000 | 1.000 | -0.007 | 0.648 | 0.971 |
SNORD64 | 3 | 94 | 1.000 | 0.539 | 0.539 | 0.661 | -0.014 |
SNORD86 | 6 | 82 | 0.641 | -0.012 | -0.007 | 0.511 | 0.000 |
snoU83B | 4 | 87 | 0.927 | 0.927 | 0.846 | 0.895 | 0.927 |
TCV_H5 | 3 | 97 | 1.000 | 1.000 | 0.685 | 1.000 | 1.000 |
TCV_Pr | 4 | 95 | 1.000 | 1.000 | 0.688 | 1.000 | 1.000 |
Tymo_tRNA-like | 28 | 64 | 1.000 | 0.916 | 1.000 | 0.973 | 1.000 |
ykoK | 36 | 61 | 0.856 | 0.756 | 0.906 | 0.841 | 0.794 |
mean | Â | Â | 0.937 | 0.831 | 0.765 | 0.866 | 0.837 |