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Table 4 Number of sets found as significantly regulated across the 18 experiments

From: Gene set analyses for interpreting microarray experiments on prokaryotic organisms

Method

α = 0.05

α = 0.005

α = 0.0005

α = 0.0002

FET 3

32

6

3

3

FET 2

78

23

11

11

FET 1

196

85

58

50

FET 1/2

338

109

54

45

GSEA-NR

522

137

61

50

SUMSQ-NR

311

64

34

31

ABSSUM-NR

444

124

66

57

SUM-NR

573

142

79

67

MAXMEAN-NR

613

181

91

74

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BMC Bioinformatics

ISSN: 1471-2105

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