Skip to main content

Table 4 Summary of most abundant merged and non-merged OPFs from the AMD, soil, and whalebone communities.

From: A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

Number of ORFs in OPF

Putative annotation

Representative GenBank Accession

AMD

Soil

Whale

  

Merged OPFs

562

350

451

Acetate CoA ligase

ZP_01856978

1628

1515

1240

Diguanylate cyclase signal protein

YP_001112705

796

1226

1086

ABC transporter

ZP_01060315

371

163

138

Resistance protein

ZP_01908921

216

121

152

Dehydrogenase

ZP_01454599

238

237

236

Cation transporting ATPase

ZP_01060472

237

170

269

Dehydrogenase

ZP_01105894

476

282

318

Translocation elongation factor

ZP_01594411

123

125

156

DNA helicase

ZP_01189997

169

184

289

Acyl CoA dehyodrogenase

ZP_01512967

Non-merged OPFs

22

7

5

Urocanate hydratase

ZP_01709366

18

5

13

DNA gyrase, A subunit

ZP_01052578

17

9

12

Nucleoside-diphosphate kinase

ZP_01106957

11

13

14

Nitrogen regulatory protein PII

NP_767252

10

10

10

50S ribosomal protein, L19

YP_471434

9

12

9

GTP-binding protein LepA

ZP_01650030

7

11

14

50S ribosomal protein, L20

ZP_01108363

8

10

9

Excinuclease ATPase subunit

YP_861824

6

10

11

GMP synthase

ZP_01753395

5

13

10

30S ribosomal protein, S13

ZP_01885769