From: A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
Number of ORFs in OPF | Putative annotation | Representative GenBank Accession | ||
---|---|---|---|---|
AMD | Soil | Whale | Â | Â |
Merged OPFs | ||||
562 | 350 | 451 | Acetate CoA ligase | ZP_01856978 |
1628 | 1515 | 1240 | Diguanylate cyclase signal protein | YP_001112705 |
796 | 1226 | 1086 | ABC transporter | ZP_01060315 |
371 | 163 | 138 | Resistance protein | ZP_01908921 |
216 | 121 | 152 | Dehydrogenase | ZP_01454599 |
238 | 237 | 236 | Cation transporting ATPase | ZP_01060472 |
237 | 170 | 269 | Dehydrogenase | ZP_01105894 |
476 | 282 | 318 | Translocation elongation factor | ZP_01594411 |
123 | 125 | 156 | DNA helicase | ZP_01189997 |
169 | 184 | 289 | Acyl CoA dehyodrogenase | ZP_01512967 |
Non-merged OPFs | ||||
22 | 7 | 5 | Urocanate hydratase | ZP_01709366 |
18 | 5 | 13 | DNA gyrase, A subunit | ZP_01052578 |
17 | 9 | 12 | Nucleoside-diphosphate kinase | ZP_01106957 |
11 | 13 | 14 | Nitrogen regulatory protein PII | NP_767252 |
10 | 10 | 10 | 50S ribosomal protein, L19 | YP_471434 |
9 | 12 | 9 | GTP-binding protein LepA | ZP_01650030 |
7 | 11 | 14 | 50S ribosomal protein, L20 | ZP_01108363 |
8 | 10 | 9 | Excinuclease ATPase subunit | YP_861824 |
6 | 10 | 11 | GMP synthase | ZP_01753395 |
5 | 13 | 10 | 30S ribosomal protein, S13 | ZP_01885769 |