Skip to main content
Figure 2 | BMC Bioinformatics

Figure 2

From: The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

Figure 2

Identification of divergent genomic regions on the 'Gene Map' view. Superimposition of different OU parameters such as GC (black line), GCS (pink), PS (green), D (blue), GRV (upper brown line) and RV (lower brown line) allows discrimination of divergent genomic regions. In this example a part of the chromosome of Pseudomonas putida KT2440 (127–774 kbp) is displayed in the applet window. A genomic fragment was highlighted using the function 'Select region' and a giant gene, PP0168, was selected by 'Select gene'. A pop-up window 'Gene Details' was opened by double-clicking the gene on the map. Genes are indicated by red and grey (for hypotheticals) bars. The black horizontal line separates genes by their direction of translation.

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us