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Table 5 Biopolymer metabolism

From: Relating gene expression data on two-component systems to functional annotations in Escherichia coli

 

BasSR

UvrY

NtrBC

YpdAB

DcuSR

Protein Function

wzb

-0.10

-

0.05

-0.04

0.25

Protein tyrosine phosphatase

wzc

-0.19

-

-0.43

-

0.13

Autophosphorylating protein tyrosine kinase Wzc

wcaC

-0.24

-0.19

-0.22

0.03

-0.22

Putative colonic acid biosynthesis glycosyl transferase

wcaE

-0.20

-0.59

-0.11

0.34

-0.11

Putative colonic acid biosynthesis glycosyl transferase

wcaF

-0.25

-0.23

-0.25

-0.17

-0.25

Putative colonic acid biosynthesis acetyl transferase

gmd

-0.19

-

-0.28

0.04

-0.28

Fucose biosynthesis, GDP-D-mannose 4,6-dehydratase

cpsB

-0.40

0.00

-0.12

-

0.00

Mannose 6-phosphate isomerase

wcaK

-0.12

-0.32

-0.01

0.17

-0.07

Colanic acid biosynthesis protein

rfbC

-0.06

-0.17

-0.12

0.13

-0.30

D-TDP-4-dehydrorhamnose 3,5-epimerase

rfbX

-0.13

-0.24

-0.19

-0.03

-0.46

O-antigen translocase

wbbH

-0.22

-0.24

-0.30

-0.06

-0.60

O-antigen translocase

wbbJ

-0.03

-0.19

-0.12

0.00

-0.36

O-acetyltransferase

cld

-0.09

0.00

-0.10

-0.06

-0.30

Chain length regulator

  1. Column 1: Genes that are part of the function biopolymer metabolism. The first gene in each operon is printed in bold.
  2. Column 2 through 6: Two-component systems that are involved in the regulation of the genes in column 1. These are the most dramatic peaks in Fig. 6, bottom panel.
  3. Column 7: Functions of the proteins that are encoded by the genes in column 1.