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Figure 3 | BMC Bioinformatics

Figure 3

From: SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis

Figure 3

LD blocking display. The upper panel shows the control options for LD blocking. The following panel shows the linkage disequilibrium pattern. The part in deep red means that there exists strong pairwise linkage disequilibrium between adjacent SNPs and the area enclosed by a thick black line designates LD block. Tagging SNPs are represented as light blue bars up in the linkage disequilibrium pattern graph. Haplotypes, haplotype frequencies and multi-allelic D' estimated in the adjacent LD blocks are displayed in the bottom of the linkage disequilibrium pattern graph.

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