From: A nonparametric model for quality control of database search results in shotgun proteomics
Dataset type | Control dataset | Real sample dataset | ||||
---|---|---|---|---|---|---|
Dataset Name | D1 | D2 | D3 | D4 | D5 | D6 |
Instrument | LCQ | LTQ | LTQ/FT | LCQ | LTQ | LTQ/FT |
Reference or notes | [46] | [55] | unpublished | [44] | [56] | unpublished |
Sample | 12 purified proteins + 23 peptides | 49 purified human proteins | 8 purified proteins | Human K562 cell line | Human liver | Human Liver |
Data source | the BIATECH Institute (Bothell, WA 98011, USA) | Proteomics Standards Research Group (sPRG) [55] | Beijing proteome Research Center (Beijing 102206, China) | Open Proteomics Database (OPD)[57] | Beijing proteome Research Center (Beijing 102206, China) | Beijing proteome Research Center (Beijing 102206, China) |