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Table 6 The 6 datasets used in this paper.

From: A nonparametric model for quality control of database search results in shotgun proteomics

Dataset type

Control dataset

Real sample dataset

Dataset Name

D1

D2

D3

D4

D5

D6

Instrument

LCQ

LTQ

LTQ/FT

LCQ

LTQ

LTQ/FT

Reference or notes

[46]

[55]

unpublished

[44]

[56]

unpublished

Sample

12 purified proteins + 23 peptides

49 purified human proteins

8 purified proteins

Human K562 cell line

Human liver

Human Liver

Data source

the BIATECH Institute (Bothell, WA 98011, USA)

Proteomics Standards Research Group (sPRG) [55]

Beijing proteome Research Center (Beijing 102206, China)

Open Proteomics Database (OPD)[57]

Beijing proteome Research Center (Beijing 102206, China)

Beijing proteome Research Center (Beijing 102206, China)