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Table 1 Resulting classification for all methods

From: Inferring modules of functionally interacting proteins using the Bond Energy Algorithm

Code

COGs

PREDICTED BEA

PREDICTED HIERARCHICAL

PREDICTED K-MEANS

PREDICTED PAM

Information storage and processing

     

J

217

213

321

544

754

K

132

122

4

0

0

L

184

181

39

0

0

Cellular processes

     

D

32

32

0

0

0

O

110

104

26

0

0

M

155

153

140

84

0

N

133

130

46

81

100

P

160

149

10

0

0

T

97

83

0

0

0

Metabolism

     

C

224

220

65

24

0

G

171

164

17

197

62

E

233

226

584

260

312

F

85

83

18

0

0

H

154

141

49

0

0

I

75

72

0

0

0

Q

62

55

0

0

0

Poorly characterized

     

R

449

431

113

250

0

S

750

748

1875

1867

2079

  1. Classification for COG Functional Categories (One classification for multiple classification COGs).