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Table 1 Comparison of encoding schemes.

From: SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles

Models

Accuracy (Ac)

Sensitivity (Sn)

Specificity (Sp)

Correlation-Coefficient (Cc)

Type I ER

Type II ER

CEH-Profile

0.75

0.74

0.76

0.52

0.11

0.13

CompactPSSM

0.73

0.71

0.75

0.46

0.13

0.14

PSSM

0.70

0.69

0.71

0.40

0.15

0.15

OE

0.58

0.60

0.56

0.16

0.23

0.19

Hydrophobicity

0.58

0.56

0.61

0.17

0.19

0.23

SARAH1

0.61

0.80

0.42

0.24

0.29

0.10