BMC Bioinformatics

Table 2 The KKA dataset.

From: Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

Family name	Rfam accession #	Mean length	% identity
5S_rRNA	RF00001	116	57
5_8S_rRNA	RF00002	154	61
IRES_HCV	RF00061	261	94
Lysine	RF00168	181	49
RFN	RF00050	140	66
Retroviral_psi	RF00175	117	92
SECIS	RF00031	64	41
SRP_bact	RF00169	93	47
SRP_euk_arch	RF00017	291	40
S_box	RF00162	107	66
T-box	RF00230	244	45
THI	RF00059	105	55
U1	RF00003	157	59
U2	RF00004	182	62
UnaL2	RF00436	54	73
sno_14q_I_II	RF00181	75	64
tRNA	RF00005	73	45
Average		142	59

The length and identity values were taken from Table 1 in Kiryu et al. [32].

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ISSN: 1471-2105

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