Table 6 Prediction of bridges and connectivity patterns from scratch
From: A simplified approach to disulfide connectivity prediction from protein sequences
# bridges | APTK(PSSM)+1-NN | DISULFIND | DISULFIND+1-NN | DIpro | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
R b | P b | Q p | R b | P b | Q p | R b | P b | Q p | R b | P b | Q p | |
1 | 30 | 30 | 27 | 30 | 30 | 30 | 30 | 30 | 30 | - | - | - |
2 | 51 | 54 | 47 | 38 | 39 | 36 | 51 | 51 | 49 | - | - | - |
3 | 63 | 65 | 58 | 27 | 27 | 15 | 66 | 67 | 61 | - | - | - |
4 | 50 | 51 | 40 | 30 | 30 | 10 | 48 | 49 | 37 | - | - | - |
all | 43 | 44 | 37 | 29 | 29 | 23 | 43 | 44 | 39 | 32 | 48 | - |