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Table 5 Prediction of bridges and connectivity patterns

From: A simplified approach to disulfide connectivity prediction from protein sequences

# bridges

1-NN

DISULFIND

DIpro

SOSVM

CSP

SVMpattern

 

P b = R b

Q p

P b = R b

Q p

P b = R b

Q p

P b = R b

Q p

P b = R b

Q p

P b = R b

Q p

2

76

76

73

73

74

74

77

77

73

73

74

74

3

66

55

51

41

61

51

62

52

66

55

69

61

4

53

38

37

24

44

27

51

36

49

33

40

30

5

39

18

30

13

41

11

43

13

36

17

31

12

2–5

64

55

49

44

56

49

65

53

62

53

57

55

  1. Results obtained assuming knowledge of the bonding state (SP39 data set): comparison between 1-NN, DISULFIND, DIpro, SOSVM, CSP and SVMpattern.
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BMC Bioinformatics

ISSN: 1471-2105

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