Table 2 Comparison of predictions of regulatory interactions made by the algorithm presented here, results obtained from the paper of Lee et al. [6] and the data from YEASTRACT database for selected genes (cell cycle – ACE2, SKN7, SWI4, SWI5, DNA/RNA/protein synthesis -, ABF1, RAP1).
| Â | Lee et al. | This paper | YEASTRACT |
|---|---|---|---|
ACE2 | FKH2 | FKH2 | FKH2 |
| Â | GAT1 | GAT1 | GAT1 |
| Â | NDD1 | NDD1 | - |
| Â | MCM1 | MCM1 | MCM1 |
| Â | SFL1 | SFL1 | SFL1 |
| Â | YAP1 | - | - |
SKN7 | ROX1 | ROX1 | ROX1 |
| Â | NRG1 | NRG1 | NRG1 |
| Â | YAP1 | YAP1 | YAP1 |
| Â | SFL1 | - | SFL1 |
| Â | SOK2 | SOK2 | SOK2 |
| Â | - | FKH1 | FKH1 |
SWI4 | MBP1 | - | MBP1 |
| Â | MCM1 | MCM1 | MCM1 |
| Â | MOT3 | MOT3 | MOT3 |
| Â | NDD1 | - | - |
| Â | SOK2 | SOK2 | SOK2 |
| Â | SWI4 | SWI4 | - |
| Â | SWI6 | SWI6 | - |
| Â | - | CRZ1 | - |
| Â | - | DAL82 | - |
| Â | - | DOT6 | - |
| Â | - | FZF1 | - |
| Â | - | GLN3 | GLN3 |
| Â | - | MAL33 | - |
| Â | - | MSN2 | MSN2 |
| Â | - | RCS1 | - |
| Â | - | RFX1 | RFX1 |
| Â | - | RGT1 | RGT1 |
| Â | - | RTG3 | RTG3 |
| Â | - | SKO1 | SKO1 |
| Â | - | STP2 | - |
| Â | - | THI2 | - |
| Â | - | MDD1 | - |
SWI5 | ASH1 | ASH1 | ASH1 |
| Â | FKH2 | FKH2 | FKH2 |
| Â | GAT1 | - | GAT1 |
| Â | GAT3 | GAT3 | GAT3 |
| Â | MCM1 | MCM1 | MCM1 |
| Â | NDD1 | NDD1 | - |
| Â | SFL1 | - | SFL1 |
ABF1 | IME4 | IME4 | IME4 |
| Â | FHL1 | FHL1 | FHL1 |
| Â | MSN1 | MSN1 | MSN1 |
| Â | DAL81 | DAL81 | DAL81 |
| Â | PHO2 | PHO2 | PHO2 |
| Â | PUT3 | PUT3 | PUT3 |
| Â | STP1 | STP1 | STP1 |
| Â | RIM101 | RIM101 | RIM101 |
| Â | - | FZF1 | - |
| Â | - | HAP2 | HAP2 |
RAP1 | GAT1 | GAT1 | GAT1 |
| Â | RPH1 | RPH1 | RPH1 |
| Â | RCS1 | RCS1 | RCS1 |
| Â | MSN4 | MSN4 | MSN4 |
| Â | SIP4 | SIP4 | SIP4 |
| Â | RAP1 | RAP1 | - |
| Â | HSF1 | HSF1 | - |
| Â | - | SUM1 | - |
| Â | - | RSF2 | - |
| Â | - | HAP4 | - |
| Â | - | GAT3 | - |
Total | 40 | 56 | - |
Confirmed by YEASTRACT | 32 | 37 | Â |
Not confirmed by YEASTRACT | 8 | 19 | Â |
Present in Lee et al. | - | 34 | Â |