From: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Program used | LTR_STRUC | LTR_seq | LTR_Rho | LTR_FINDER | LTR harvest | LTR_seq | LTR_Rho | LTR_FINDER | LTR harvest |
---|---|---|---|---|---|---|---|---|---|
Run-number | 1 | 2 | 3 | 4-1 | 5 | 6 | 7 | 8 | 9 |
Parameter set | default* | default | default | default | default | see Tab.1 | see Tab.1 | see Tab.1 | see Tab.1 |
Index files contruction [s] | - | - | - | - | 8 | - | - | - | 8 |
Run-time [s] | ~600 | 413 | 190 | 19 | 3 | 126 | 168 | 19 | 2 |
Annotations | 50 | 50 | 47 | 50 | 50 | 50 | 46 | 50 | 50 |
Predictions | 39 | 50 | 46 | 56 | 68 | 38 | 38 | 43 | 45 |
Sensitivity | 76% | 80.0% | 89.4% | 100% | 98.0% | 74.0% | 69.6% | 84.0% | 90.0% |
Specificity | 97.4% | 100.0% | 91.3% | 89.3% | 72.1% | 97.4% | 84.2% | 97.7% | 100% |
Comment | Â | Â | program error chr03,06 | Â | Â | Â | program error chr03, 06,09 | Â | Â |