From: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
LTR retrotransposon predictions from LTRharvest and clustering | Drosophila melanogaster annotation of LTR retrotransposon families from [26] | |||
---|---|---|---|---|
cluster | # sequences in cluster | name of family | full-length sequences | all sequences |
LTRharvest_Dmel0 | 92 | Roo | 58 | 146 |
LTRharvest_Dmel1 | 18 | opus | 16 | 24 |
LTRharvest_Dmel2 | 15 | mdg1 | 13 | 25 |
LTRharvest_Dmel3 | 2 | McClintock | 2 | 2 |
LTRharvest_Dmel4 | 22 | blood | 22 | 22 |
LTRharvest_Dmel5 | 26 | 412 | 24 | 31 |
LTRharvest_Dmel6 | 50 | 297,17.6 | 25 | 69 |
LTRharvest_Dmel7 | 12 | Stalker, Stalker2, Stalker4 | 9 | 27 |
LTRharvest_Dmel8 | 3 | rover | 3 | 6 |
LTRharvest_Dmel9 | 15 | micropia, DM88, invader1 | 3 | 63 |
LTRharvest_Dmel10 | 3 | invader3 | 3 | 16 |
LTRharvest_Dmel11 | 19 | Tirant | 15 | 20 |
LTRharvest_Dmel12 | 28 | copia | 26 | 30 |
LTRharvest_Dmel13 | 9 | diver | 9 | 9 |
LTRharvest_Dmel14 | 6 | Quasimodo | 5 | 14 |
LTRharvest_Dmel15 | 5 | Transpac | 5 | 5 |
LTRharvest_Dmel16 | 3 | Idefix | 2 | 7 |
LTRharvest_Dmel17 | 12 | Burdock | 7 | 13 |
LTRharvest_Dmel18 | 3 | Â | Â | Â |
LTRharvest_Dmel19 | 16 | blastopia | 13 | 17 |
LTRharvest_Dmel20 | 6 | springer | 5 | 11 |
LTRharvest_Dmel21 | 12 | HMS-Beagle | 9 | 13 |
LTRharvest_Dmel22 | 3 | Â | Â | Â |
LTRharvest_Dmel23 | 5 | Â | Â | Â |
LTRharvest_Dmel24 | 3 | GATE | 0 | 20 |
LTRharvest_Dmel25 | 8 | mdg3 | 8 | 16 |
LTRharvest_Dmel26 | 4 | invader2 | 3 | 10 |
LTRharvest_Dmel27 | 2 | Â | Â | Â |
LTRharvest_Dmel28 | 4 | 3S18 | 4 | 6 |
LTRharvest_Dmel29 | 2 | gypsy5 | 1 | 2 |
LTRharvest_Dmel30 | 3 | Â | Â | Â |
LTRharvest_Dmel31 | 2 | Â | Â | Â |
LTRharvest_Dmel32 | 2 | gypsy, gtwin | 3 | 8 |
LTRharvest_Dmel33 | 2 | invader4 | 2 | 9 |
LTRharvest_Dmel34 | 2 | Tabor | 2 | 3 |
LTRharvest_Dmel35 | 2 | Â | Â | Â |