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Table 8 Execution Times for MSVNS and DaliLite. Times correspond to 8 pairwise comparisons among the 5 biggest proteins in NH3D database. Runs were done in the same desktop computer.

From: A simple and fast heuristic for protein structure comparison

Method

Time(sec.)

MSVNS1

357

MSVNS2

508

MSVNS3

613

DaliLite

758