Figure 1
From: Multiple organism algorithm for finding ultraconserved elements
Workflow for Computing Maximal Common Prefixes between Two Organisms. The steps for computing the maximal common prefixes between two organisms involves preparing the raw genome data into a set of sequence files in FASTA format, generating suffix array data structures from the sequence files, computing the MCP's in a pairwise fashion with the suffix arrays, then perform the union of the pairwise files together to produce a single MCP result file.