Table 3 Degrees of the source genes that are shared between the mutant network and the ChIP network (data for YPD medium only)
From: Current approaches to gene regulatory network modelling
| Â | Â | target genes | Â | ||
|---|---|---|---|---|---|
source gene | in the mutant network | in the ChIP network | shared between ChIP and mutant network | intersection significant according to hypergeometric test | |
YAL051W | YAF1 | 1 | 61 | 0 | no |
YOR028C | CIN5 | 1 | 153 | 0 | no |
YHL009C | YAP3 | 2 | 18 | 0 | no |
YKL043W | PHD1 | 3 | 67 | 0 | no |
YLR014C | PPR1 | 7 | 25 | 0 | no |
YBR083W | TEC1 | 20 | 42 | 0 | no |
YMR275C | BUL1 | 27 | 3 | 0 | no |
YPL049C | DIG1 | 32 | 51 | 0 | no |
YLR113W | HOG1 | 145 | 12 | 0 | no |
YOL067C | RTG1 | 177 | 6 | 0 | no |
YER040W | GLN3 | 52 | 16 | 1 | no |
YMR021C | MAC1 | 52 | 42 | 2 | no |
YGR040W | KSS1 | 253 | 18 | 2 | no |
YLR182W | SWI6 | 42 | 158 | 3 | no |
YOR038C | HIR2 | 25 | 16 | 2 | yes |
YMR042W | ARG80 | 5 | 16 | 4 | yes |
YDL056W | MBP1 | 6 | 134 | 4 | yes |
YMR019W | STB4 | 9 | 33 | 5 | yes |
YML007W | YAP1 | 37 | 72 | 8 | yes |
YDR146C | SWI5 | 35 | 120 | 9 | yes |
YHR084W | STE12 | 43 | 63 | 14 | yes |
YEL009C | GCN4 | 51 | 75 | 19 | yes |
YER111C | SWI4 | 547 | 161 | 29 | yes |
sum of edges | 1572 (1157) | 1362 (924) | 102 | Â | |