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Table 2 Some properties of the mutant network and the ChIP network at different thresholds

From: Current approaches to gene regulatory network modelling

  ChIP network (p < 0.01) ChIP network (p < 0.001) mutant network (γ = 2.0) mutant network (γ = 2.5) mutant network (γ = 3.0)
source genes 202 169 250 236 227
target genes 4939 2845 5396 4778 3920
genes 4980 2930 5654 4798 3959
edges 18842 6170 32017 17436 10356
edges where source gene and target gene have the same cellular role annotation in YPD http://www.proteome.com 3694 (19.6%) 857 (13.9%) 4096 (12.8%) 2425 (13.9%) 1507 (14.6%)
edges per source gene 93.3 36.5 135.7 73.8 45.6