Table 2 Some properties of the mutant network and the ChIP network at different thresholds
From: Current approaches to gene regulatory network modelling
|  | ChIP network (p < 0.01) | ChIP network (p < 0.001) | mutant network (γ = 2.0) | mutant network (γ = 2.5) | mutant network (γ = 3.0) |
|---|---|---|---|---|---|
source genes | 202 | 169 | 250 | 236 | 227 |
target genes | 4939 | 2845 | 5396 | 4778 | 3920 |
genes | 4980 | 2930 | 5654 | 4798 | 3959 |
edges | 18842 | 6170 | 32017 | 17436 | 10356 |
edges where source gene and target gene have the same cellular role annotation in YPD http://www.proteome.com | 3694 (19.6%) | 857 (13.9%) | 4096 (12.8%) | 2425 (13.9%) | 1507 (14.6%) |
edges per source gene | 93.3 | 36.5 | 135.7 | 73.8 | 45.6 |